7NI5

Human ATM kinase with bound inhibitor KU-55933


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.78 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Molecular basis of human ATM kinase inhibition.

Stakyte, K.Rotheneder, M.Lammens, K.Bartho, J.D.Gradler, U.Fuchss, T.Pehl, U.Alt, A.van de Logt, E.Hopfner, K.P.

(2021) Nat Struct Mol Biol 28: 789-798

  • DOI: https://doi.org/10.1038/s41594-021-00654-x
  • Primary Citation of Related Structures:  
    7NI4, 7NI5, 7NI6

  • PubMed Abstract: 

    Human checkpoint kinase ataxia telangiectasia-mutated (ATM) plays a key role in initiation of the DNA damage response following DNA double-strand breaks. ATM inhibition is a promising approach in cancer therapy, but, so far, detailed insights into the binding modes of known ATM inhibitors have been hampered due to the lack of high-resolution ATM structures. Using cryo-EM, we have determined the structure of human ATM to an overall resolution sufficient to build a near-complete atomic model and identify two hitherto unknown zinc-binding motifs. We determined the structure of the kinase domain bound to ATPγS and to the ATM inhibitors KU-55933 and M4076 at 2.8 Å, 2.8 Å and 3.0 Å resolution, respectively. The mode of action and selectivity of the ATM inhibitors can be explained by structural comparison and provide a framework for structure-based drug design.


  • Organizational Affiliation

    Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität, Munich, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Serine-protein kinase ATM
A, B
3,086Homo sapiensMutation(s): 0 
Gene Names: ATM
EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13315 (Homo sapiens)
Explore Q13315 
Go to UniProtKB:  Q13315
PHAROS:  Q13315
GTEx:  ENSG00000149311 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13315
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.78 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyCRC1054
German Research Foundation (DFG)GermanyCRC1064
German Research Foundation (DFG)GermanyCRC1361
Leibniz AssociationGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-01
    Type: Initial release
  • Version 1.1: 2021-10-06
    Changes: Data collection, Database references
  • Version 1.2: 2021-10-20
    Changes: Data collection, Database references